
Ö. Uğur, S. W. Pickl, G. W. Weber, R. W. Wünschiers, An Algorithmic Approach to Analyse Genetic Networks and Biological Energy Production: an Introduction and Contribution where OR Meets Biology, Optimization, 58(1), pp. 1-22, (January 2009).

Ö. Uğur, B. Karasözen, M. Schaefer, K. Yapıcı, Derivative Free Optimization Methods for Optimizing Stirrer Configurations, European Journal of Operational Research, 191(3), pp. 855-863, (December 2008).

Mathematical and Data Mining Contributions to Dynamics and Optimization of Gene-Environment Networks
G. W. Weber, P. Taylan, B. Akteke-Öztürk, Ö. Uğur, Mathematical and Data Mining Contributions to Dynamics and Optimization of Gene-Environment Networks, Electronic Journal of Theoretical Physics (EJTP), 4, 16(II), pp. 115-146, (December 2007).
G. W. Weber, P. Taylan, B. Akteke-Öztürk, Ö. Uğur, Mathematical and Data Mining Contributions to Dynamics and Optimization of Gene-Environment Networks, in: Crossing in Complexity: Interdisciplinary Application of Physics in Biological and Social Systems, Ignazio Licata and Ammar Sakaji (editors), Nova Publishers, 2010.
ISBN: 978-1-61668-037-4

Ö. Uğur and G. W. Weber, Optimization and Dynamics of Gene-Environment Networks with Intervals, Journal of Industrial and Management Optimization, 3(2), pp. 357-379, (May 2007).

Ö. Uğur and M. Akhmet, Boundary Value Problems for Higher Order Linear Impulsive Differential Equations, Journal of Mathematical Analysis and Applications, 319(1), pp. 139-156, (July 2006).